PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC063811.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 77aa    MW: 8868.05 Da    PI: 9.8133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC063811.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH58.31.3e-182773455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  EcC063811.10 27 VHNLSERRRRDRINEKMKALQELIPHC-----NKADKASMLDEAIEYLKSLQ 73
                  6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-202077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.3042372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-122677No hitNo description
PfamPF000106.5E-162773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-222777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-142977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
DVELESADTK KPTRGSTSSK RSRAAEVHNL SERRRRDRIN EKMKALQELI PHCNKADKAS  60
MLDEAIEYLK SLQMQVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13136ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038342.11e-44PREDICTED: transcription factor PIF1-like isoform X2
RefseqXP_010038341.11e-44PREDICTED: transcription factor PIF1-like isoform X1
SwissprotO805364e-36PIF3_ARATH; Transcription factor PIF3
TrEMBLA0A059A8J08e-45A0A059A8J0_EUCGR; Uncharacterized protein
STRINGSolyc09g063010.2.12e-38(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-37phytochrome interacting factor 3